Garvan Institute Dataset
  NA12878D NA12878J
Reads NA12878D_HiSeqX_R1.fastq.gz NA12878J_HiSeqX_R1.fastq.gz
NA12878D_HiSeqX_R2.fastq.gz NA12878J_HiSeqX_R2.fastq.gz
Mappings NA12878D_HiSeqX_R1.bam NA12878J_HiSeqX_R1.bam
NA12878D_HiSeqX_R1.bam.bai NA12878J_HiSeqX_R1.bam.bai
Variants NA12878D_HiSeqX_R1.vcf.gz NA12878J_HiSeqX_R1.vcf.gz
NA12878D_HiSeqX_R1.vcf.gz.tbi NA12878J_HiSeqX_R1.vcf.gz.tbi
NA12878D_HiSeqX_R1.deduplicated.vcf.gz NA12878J_HiSeqX_R1.deduplicated.vcf.gz
NA12878D_HiSeqX_R1.deduplicated.vcf.gz.tbi NA12878J_HiSeqX_R1.deduplicated.vcf.gz.tbi
FastQC Statistics NA12878D_HiSeqX_R1.stats-fastqc.html NA12878J_HiSeqX_R1.stats-fastqc.html
NA12878D_HiSeqX_R1.stats-fastqc.txt NA12878J_HiSeqX_R1.stats-fastqc.txt
Picard MarkDuplicates NA12878D_HiSeqX_R1.deduplicated.bam NA12878J_HiSeqX_R1.deduplicated.bam
NA12878D_HiSeqX_R1.duplication_metrics NA12878J_HiSeqX_R1.duplication_metrics
Picard CollectInsertSizeMetrics NA12878D_HiSeqX_R1.hist.pdf NA12878J_HiSeqX_R1.hist.pdf
NA12878D_HiSeqX_R1.insert_size_metrics NA12878J_HiSeqX_R1.insert_size_metrics
Picard CollectWgsMetrics NA12878D_HiSeqX_R1.wgs_metrics NA12878J_HiSeqX_R1.wgs_metrics
NA12878D_HiSeqX_R1.deduplicated.wgs_metrics NA12878J_HiSeqX_R1.deduplicated.wgs_metrics
Picard CalculateHsMetrics (on CCDS exons) NA12878D_HiSeqX_R1.deduplicated.ccds.hsmetrics NA12878J_HiSeqX_R1.deduplicated.ccds.hsmetrics
The reads files were provided by the Garvan Institute, and all other files were generated by running analyses on the DNAnexus platform.
In addition to the direct links above, you can access all of the data via the HiSeq X-Ten Data public project on DNAnexus (and you can copy any of the files to your own projects for further analyses).